PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472549
Common NameARALYDRAFT_472549
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 152aa    MW: 16397.3 Da    PI: 10.2005
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472549genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-2060117155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
             ++++GVr+++ +g+W+AeIr+ +  +g   r  r++lg+f taeeAa a+++a+ +l g
  472549  60 KKFRGVRQRP-WGKWAAEIRCGRAhGGgkGRpERVWLGTFETAEEAALAYDNAAIQLIG 117
             59********.**********77755575449**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.2E-301150IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.06E-2360125No hitNo description
Gene3DG3DSA:3.30.730.103.6E-2761125IPR001471AP2/ERF domain
PROSITE profilePS5103221.48361125IPR001471AP2/ERF domain
PfamPF008477.7E-1461117IPR001471AP2/ERF domain
SMARTSM003801.0E-2961131IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-1961125IPR016177DNA-binding domain
PRINTSPR003671.0E-116273IPR001471AP2/ERF domain
PRINTSPR003671.0E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
TEATDSSSSE DESPPSRRRG KKLVKEIVID PSDPPEVGKT RFKIRIPARF LAPKTTTNKK  60
KFRGVRQRPW GKWAAEIRCG RAHGGGKGRP ERVWLGTFET AEEAALAYDN AAIQLIGPDA  120
PTNFRRPDVD SPVVKQDSDA GGASAASGED V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-1860124159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1760124462ATERF1
3gcc_A1e-1760124462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0870641e-142AY087064.1 Arabidopsis thaliana clone 31252 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893256.11e-105hypothetical protein ARALYDRAFT_472549, partial
SwissprotQ8W4I52e-72ERF69_ARATH; Ethylene-responsive transcription factor ERF069
TrEMBLD7KML61e-105D7KML6_ARALL; Putative uncharacterized protein (Fragment)
STRINGfgenesh2_kg.1__2503__AT1G22985.11e-105(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.15e-58ERF family protein